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    • npspec

      Public
      HTML Website for browsing predicted spectra of metabolites
      HTML
      MIT License
      0000Updated Jan 21, 2026Jan 21, 2026
    • Files accompanying Doosthosseini H. et al. (2025)
      Python
      MIT License
      0000Updated Nov 21, 2025Nov 21, 2025
    • Webapp to display predicted spectral data for metabolites
      Python
      MIT License
      1000Updated Feb 6, 2025Feb 6, 2025
    • bioHSI

      Public
      Jupyter Notebook
      MIT License
      1000Updated Feb 6, 2025Feb 6, 2025
    • DNA plotting library for Python
      Python
      MIT License
      7130021Updated Mar 20, 2024Mar 20, 2024
    • Files accompanying Boo and Toth et al. (2023)
      ImageJ Macro
      1100Updated Jan 29, 2024Jan 29, 2024
    • Files accompanying Nou et al. (2023)
      Jupyter Notebook
      0000Updated Aug 4, 2023Aug 4, 2023
    • Files accompanying Triassi, et al. (2023)
      Jupyter Notebook
      0000Updated Jun 9, 2023Jun 9, 2023
    • Files accompanying JH Park et. al. 2022
      Python
      MIT License
      0000Updated Oct 22, 2022Oct 22, 2022
    • Jupyter notebooks and associated data for designing enzyme-modified peptides
      Jupyter Notebook
      MIT License
      1100Updated Nov 23, 2021Nov 23, 2021
    • Code and notebooks for analysis of LC-MS data of RiPP modification
      Python
      MIT License
      0000Updated Nov 19, 2021Nov 19, 2021
    • Code used to generate plots in "Selection for constrained peptides that bind to a single target protein" Andrew M. King, et al.
      Jupyter Notebook
      MIT License
      0100Updated Sep 21, 2021Sep 21, 2021
    • Files accompanying Shao, et al. (2020)
      MATLAB
      0100Updated Oct 14, 2020Oct 14, 2020
    • Files accompanying Espah Borujeni, et al. (2020)
      Python
      MIT License
      1300Updated Jul 3, 2020Jul 3, 2020
    • biofilms

      Public
      Files accompanying Moser, et al. (2019) Biofilm paper
      0200Updated Apr 25, 2019Apr 25, 2019
    • Relevant files for Moser, et al (2018). Dynamic control of endogenous metabolism with combinatorial logic circuits.
      MATLAB
      2100Updated Nov 17, 2018Nov 17, 2018
    • Software for article "Deep learning to predict the lab-of-origin of engineered DNA"
      Python
      91310Updated Aug 7, 2018Aug 7, 2018
    • Tools developed as part of the MIT-Broad Foundry for Synthetic Biology
      Python
      MIT License
      3700Updated Sep 29, 2017Sep 29, 2017
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