V2.0

Dockerfile

@@ -1,101 +1,85 @@
-FROM python:3.12-slim-bookworm
+FROM images.canfar.net/skaha/astroml:latest
 
-LABEL Description="Conda-Free ShapePipe Docker Image"
-ENV SHELL=/bin/bash
-ENV QT_QPA_PLATFORM=offscreen
+# Metadata
+LABEL maintainer="martin.kilbinger@cea.fr"
+LABEL description="ShapePipe base image with common dependencies"
 
-# Install system dependencies
-RUN apt-get update -y --quiet --fix-missing && \
-    apt-get dist-upgrade -y --quiet --fix-missing && \
-    apt-cache policy autconf && \ 
-    apt-get install -y --quiet \
-    apt-utils \
-    autoconf \
-    automake \
-    build-essential \
-    cmake \
-    curl \
-    wget \
-    ffmpeg \
-    g++ \
-    gcc  \
-    gfortran \
-    git-lfs \
-    libatlas-base-dev \
-    libblas-dev \
-    liblapack-dev \
-    libcfitsio-dev \
-    libfftw3-bin \
-    libfftw3-dev \
-    libgl1-mesa-glx \
-    libgsl-dev \
-    libtool \
-    libtool-bin \
-    libtool-doc \
-    locales \
-    locate \
-    make \
-    openmpi-bin \
-    libopenmpi-dev \
-    pkg-config \
-    protobuf-compiler \
-    psfex=3.21.1-1 \
-    source-extractor=2.25.0+ds-3 \
-    weightwatcher=1.12+dfsg-3 \
-    vim \
-    xterm && \
-    apt-get clean -y && \
-    apt-get autoremove --purge --quiet -y && \
-    rm -rf /var/lib/apt/lists/* /var/tmp/*
+# Install system dependencies needed for ShapePipe and WeightWatcher
+#RUN echo "nameserver 8.8.8.8" > /etc/resolv.conf && \
+RUN apt-get update -o Acquire::ForceIPv4=true -y --quiet && \
+    apt-get install -y --no-install-recommends \
+        psfex source-extractor \
+        libproj-dev proj-bin && \
+    apt-get clean && rm -rf /var/lib/apt/lists/*
 
-# Install CDS client by hand
+# Build and install WeightWatcher from source
+ARG WW_VERSION=1.12
 RUN cd /tmp && \
-    curl -O http://cdsarc.u-strasbg.fr/ftp/pub/sw/cdsclient.tar.gz && \
-    tar xvfz cdsclient.tar.gz \ 
-    && cd cdsclient-* \
-    && ./configure && make && make install \
-    && rm -rf /tmp/*
+    wget --no-check-certificate https://github.com/astromatic/weightwatcher/archive/refs/tags/${WW_VERSION}.tar.gz && \
+    tar -xzf ${WW_VERSION}.tar.gz && \
+    rm ${WW_VERSION}.tar.gz
+RUN cd /tmp/weightwatcher-${WW_VERSION} && \
+    sed -i 's/^  prefstruct\tprefs;/extern prefstruct\tprefs;/' src/prefs.h && \
+    sed -i 's/^char\t\tgstr\[MAXCHAR\];/extern char\t\tgstr[MAXCHAR];/' src/globals.h && \
+    sed -i 's/^int\t\tbswapflag;/extern int\t\tbswapflag;/' src/fits/fitscat.h && \
+    sed -i '/preflist\.h/a prefstruct\tprefs;' src/prefs.c && \
+    sed -i '/xml\.h/a char\t\tgstr[MAXCHAR];' src/main.c && \
+    sed -i '/fitscat\.h/a int\t\tbswapflag;' src/fits/fitscat.c && \
+    ./configure --quiet && \
+    make --quiet && \
+    make install
 
-# Install python dependencies
+# Install Python dependencies (including Jupyter Lab if desired)
 RUN pip install --no-cache-dir --upgrade pip && \
     pip install --no-cache-dir \
-    astropy==6.1.0 \
-    cs_util==0.1.9 \
-    galsim==2.5.3 \
-    ipython==8.18.1 \
-    joblib==1.4.2 \
-    jupyterlab==4.3.1 \
-    matplotlib==3.8.4 \
-    mccd==1.2.4 \
-    modopt==1.6.1 \
-    mpi4py==4.0.3 \
-    numpy==1.26.4 \
-    numpydoc==1.2  \
-    pandas==2.2  \
-    pytest==8.3.3 \
-    pytest-cov==5.0.0 \
-    pytest-pycodestyle==2.4.1 \
-    pytest-pydocstyle==2.4.0 \
-    reproject==0.14.1 \
-    sf_tools==2.0.4 \
-    sip_tpv==1.1 \
-    skaha==1.7.0 \
-    sqlitedict==2.0.0 \
-    termcolor==1.1.0 \
-    tqdm==4.63.0 \
-    treecorr==5.1.1 \
-    vos==3.6.1.1 \
-    git+https://github.com/aguinot/ngmix@stable_version \
-    git+https://github.com/tobias-liaudat/Stile@v0.1
+        astropy==6.1.0 \
+        cs_util==0.1.9 \
+        galsim==2.5.3 \
+        ipython==8.18.1 \
+        joblib==1.4.2 \
+        jupyterlab==4.3.1 \
+        matplotlib==3.8.4 \
+        mccd==1.2.4 \
+        modopt==1.6.1 \
+        mpi4py==4.0.3 \
+        numpy==1.26.4 \
+        numpydoc==1.2 \
+        pandas==2.2 \
+        pytest==8.3.3 \
+        pytest-cov==5.0.0 \
+        pytest-pycodestyle==2.4.1 \
+        pytest-pydocstyle==2.4.0 \
+        reproject==0.14.1 \
+        sf_tools==2.0.4 \
+        sip_tpv==1.1 \
+        skaha==1.7.0 \
+        sqlitedict==2.0.0 \
+        termcolor==1.1.0 \
+        tqdm==4.63.0 \
+        treecorr==5.1.1 \
+        vos==3.6.1.1 \
+        "setuptools<81" \
+        git+https://github.com/aguinot/ngmix@stable_version \
+        git+https://github.com/tobias-liaudat/Stile@v0.1 \
+        astroquery \
+        canfar \
+        h5py \
+        PyQt5 \
+        pyqtgraph \
+        python-pysap \
+        numba \
+        fitsio
 
+# Set working directory and copy source code
 WORKDIR /app
 COPY . /app/.
+RUN chown -R root:root /app && chmod -R u+rwX /app
 
-# Install shapepipe and symlink scripts
-RUN pip install --no-cache-dir -e . && \ 
+# Install ShapePipe in editable mode and expose scripts
+RUN pip install --no-cache-dir -e . && \
     for ext in .py .sh .bash; do \
-    for script in /app/scripts/*/*$ext; do \
-    link_name=`basename $script $ext`; \
-    ln -s $script /usr/local/bin/$link_name; \
-    done; \
+        for script in /app/scripts/*/*$ext; do \
+            link_name=$(basename $script $ext); \
+            ln -s $script /usr/local/bin/$link_name; \
+        done; \
     done

Dockerfile.jupyter

@@ -0,0 +1,7 @@
+# Dockerfile for ShapePipe Jupyter Lab
+# Uses the shared base image
+
+FROM shapepipe-base
+
+# Default command starts Jupyter Lab
+ENTRYPOINT ["jupyter","lab","--ip=0.0.0.0","--port=8888","--no-browser","--allow-root"]