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@BirolLab

Birol Lab

Bioinformatics Technology Lab

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  1. ntRoot ntRoot Public

    🌳 Scalable ancestry from genomic data

    Python 12

  2. ntSynt ntSynt Public

    Detecting multi-genome synteny using minimizer graph mapping

    Python 105 2

  3. goldrush goldrush Public

    Linear-time de novo Long Read Assembler

    C++ 41 2

  4. ntEdit ntEdit Public

    ✏️ Genome assembly polishing & SNV detection

    C++ 73 10

  5. AMPlify AMPlify Public

    Attentive deep learning model for antimicrobial peptide prediction

    Python 56 13

  6. NanoSim NanoSim Public

    Nanopore sequence read simulator

    Python 295 64

Repositories

Showing 10 of 92 repositories
  • ntStat Public

    ntStat: a toolkit for statistical analysis of k-mer frequency and depth

    BirolLab/ntStat’s past year of commit activity
    C++ 3 GPL-3.0 0 0 0 Updated Mar 25, 2026
  • AIEdit Public

    Machine learning on spaced seed hit patterns for assembly polishing

    BirolLab/AIEdit’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Mar 25, 2026
  • btl Public

    🔬 Bioinformatics Technology Lab, Genome Sciences Centre

    BirolLab/btl’s past year of commit activity
    HTML 2 3 4 0 Updated Mar 25, 2026
  • ntSynt-viz Public

    Multi-genome synteny block visualization tool

    BirolLab/ntSynt-viz’s past year of commit activity
    Python 55 GPL-3.0 4 1 0 Updated Mar 25, 2026
  • straglr Public

    Tandem repeat expansion detection or genotyping from long-read alignments

    BirolLab/straglr’s past year of commit activity
    Python 149 14 34 1 Updated Mar 25, 2026
  • aakomp Public

    Fast, alignment-free genome completeness estimator

    BirolLab/aakomp’s past year of commit activity
    C++ 6 GPL-3.0 1 0 0 Updated Mar 24, 2026
  • physlr Public

    ⛓️ Construct a Physical Map from Linked Reads

    BirolLab/physlr’s past year of commit activity
    Python 18 GPL-3.0 7 5 0 Updated Mar 24, 2026
  • RAILS Public

    🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling

    BirolLab/RAILS’s past year of commit activity
    Perl 27 GPL-3.0 5 0 0 Updated Mar 24, 2026
  • tigmint Public

    ⛓ Correct misassemblies using linked AND long reads

    BirolLab/tigmint’s past year of commit activity
    Python 63 GPL-3.0 13 1 0 Updated Mar 24, 2026
  • pavfinder_transcriptome Public
    BirolLab/pavfinder_transcriptome’s past year of commit activity
    Python 0 0 1 0 Updated Mar 24, 2026
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