Repositories list

• DDRi-screens

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• omega

  Public
  OMEGA code described in "Scalable and cost-efficient custom gene library assembly from oligopools."

  Python

  •

  GNU General Public License v3.0

  •1212 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2026Mar 18, 2026

• morphiv_viewer

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 14, 2026Mar 14, 2026

• gilbertlabucsf.github.io

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2026Jan 15, 2026

• T_Cell_CRISPRoff

  Public
  HTML

  •00 forks•33 stars•00 issues•00 pull requests•Updated Nov 4, 2025Nov 4, 2025

• CanDI

  Public
  CanDI - A global cancer data integrator

  databasecancer-researchdepmap

  databasecancer-researchdepmap

  Jupyter Notebook

  •

  MIT License

  •55 forks•88 stars•66 issues•00 pull requests•Updated Aug 6, 2025Aug 6, 2025

• COMET_alignment

  Public
  my work on making a new pipeline to process COMET screen data

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2025May 14, 2025

• DDRi_RNAseq

  Public
  RNAseq analysis repository for analysis

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 31, 2025Jan 31, 2025

• Decitabine-treatment

  Public
  A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation

  bioinformaticsdrug-discoverydna-methylation+ 1

  bioinformaticsdrug-discoverydna-methylationrna-modifications

  Jupyter Notebook

  •

  MIT License

  •11 fork•22 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• gbm_perturb

  Public
  In vivo perturb-seq in GBM models

  Jupyter Notebook

  •

  Apache License 2.0

  •00 forks•33 stars•11 issue•00 pull requests•Updated Sep 3, 2024Sep 3, 2024

• dCas9-fusions

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 16, 2024Apr 16, 2024

• server_wiki

  Public
  Guidelines and tips for server usage

  11 fork•00 stars•00 issues•00 pull requests•Updated Jan 5, 2024Jan 5, 2024

• CRISPRi-dual-sgRNA-screens

  Public
  Python

  •

  MIT License

  •66 forks•00 stars•00 issues•00 pull requests•Updated Dec 11, 2023Dec 11, 2023

• ScreenPro2

  Public archive
  [This is an archived repository, see the current version in Arc Institute GitHub]

  crispr-analysiscrisprcrispr-cas9

  crispr-analysiscrisprcrispr-cas9

  Python

  •

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Dec 11, 2023Dec 11, 2023

• dCas9-tiling

  Public
  Scripts for designing dCas9 tiling libraries

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 5, 2022Nov 5, 2022

• QuantSeq-FWD-with-UMIs

  Public
  QuantSeq FWD with UMIs RNA-seq analysis pipeline

  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 17, 2022Feb 17, 2022