chore: update Python versions in CI and package

Author: cdiener

.github/workflows/pythonpackage.yml

@@ -16,7 +16,7 @@ jobs:
     strategy:
       matrix:
         os: ["ubuntu-latest", "windows-latest", "macos-latest"]
-        python-version: ["3.9", "3.12"]
+        python-version: ["3.10", "3.13"]
     runs-on: "${{matrix.os}}"
 
     steps:

pyproject.toml

@@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta"
 
 [tool.black]
 line-length = 88
-target-version = ['py38']
+target-version = ['py313']
 include = '\.pyi?$'
 exclude = '''
 

setup.cfg

@@ -18,10 +18,10 @@ classifiers =
 	Topic :: Scientific/Engineering :: Bio-Informatics
 	License :: OSI Approved :: Apache Software License
 	Programming Language :: Python :: 3
-	Programming Language :: Python :: 3.8
-	Programming Language :: Python :: 3.9
 	Programming Language :: Python :: 3.10
 	Programming Language :: Python :: 3.11
+	Programming Language :: Python :: 3.12
+	Programming Language :: Python :: 3.13
 keywords =
 	microbiome
 	microbiota
@@ -33,7 +33,7 @@ keywords =
 [options]
 packages = find:
 zip_safe = True
-python_requires = >=3.7
+python_requires = >=3.10
 install_requires =
 	pandas>=2.1.0
 	cobra>=0.29.0