DESCRIPTION

Type: Package
Package: ProjectSVR
Title: Projecting Query scRNA-seq Data Onto A Reference Atlas Via Support
    Vector Regression
Version: 0.2.1
Authors@R: 
    person("Jianing", "Gao", , "gjn1106@mail.ustc.edu.cn", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6599-2133"))
Description: This package implements methods to: 1. Extract signature gene
    sets for a given reference atlas; 2. Transform the raw counts matrix
    to signature matrix; 3. Build a SVR model using signature matrix to
    predict reference embeddings; 4. Project new query to reference.
License: MIT + file LICENSE
URL: https://github.com/JarningGau/ProjectSVR
BugReports: https://github.com/JarningGau/ProjectSVR/issues
Depends:
    R (>= 4.0.0)
Imports:
    ComplexHeatmap (>= 2.10.0),
    cowplot (>= 1.1.1),
    data.table (>= 1.14.2),
    dplyr (>= 1.0.8),
    e1071 (>= 1.7.9),
    ggplot2 (>= 3.3.5),
    ggrepel (>= 0.9.1),
    ggsignif (>= 0.6.3),
    magrittr (>= 2.0.3),
    Matrix (>= 1.4.1),
    methods (>= 4.1.2),
    mlr3 (>= 0.13.1),
    mlr3learners (>= 0.5.2),
    mlr3verse (>= 0.2.2),
    parallel (>= 4.1.2),
    patchwork,
    pbapply (>= 1.5.0),
    RANN (>= 2.6.1),
    reticulate (>= 1.24),
    rlang (>= 1.0.6)
Suggests:
    AUCell (>= 1.16.0),
    knitr,
    RColorBrewer (>= 1.1.3),
    rmarkdown,
    scales (>= 1.2.1),
    Seurat (>= 4.1.0),
    stats (>= 4.1.2),
    tidyverse (>= 1.3.2),
    UCell (>= 1.3.1),
    utils (>= 4.1.2)
VignetteBuilder: 
    knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
SystemRequirements: anndata, cnmf (>= 1.3), sklearn
Collate: 
    'cnmf.R'
    'data.R'
    'utils.R'
    'grid_cells.R'
    'objects.R'
    'label_transfer.R'
    'projection.R'
    'signature_score.R'
    'themes.R'
    'visualization.R'
    'wrappers.R'